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1/16-finals
1/8-finals
Quarter-finals
Semi-finals
Final
Draw
Play Offs1/16-finals
| 1 | Ludogorets (22) | Ferencvaros (12) | 0 : 2, 2 : 1 |
| 2 | Braga (6) | Bye | |
| 3 | Panathinaikos (20) | Plzen (14) | 2 : 1, 2 : 2 |
| 4 | Betis (4) | Bye | |
| 5 | Din. Zagreb (23) | Genk (9) | 3 : 3, 1 : 3 |
| 6 | Freiburg (7) | Bye | |
| 7 | PAOK (17) | Celta Vigo (16) | 0 : 1, 1 : 2 |
| 8 | Lyon (1) | Bye | |
| 9 | Celtic (21) | Stuttgart (11) | 1 : 0, 1 : 4 |
| 10 | FC Porto (5) | Bye | |
| 11 | Fenerbahce (19) | Nottingham (13) | 2 : 1, 0 : 3 |
| 12 | Midtjylland (3) | Bye | |
| 13 | Brann (24) | Bologna (10) | 0 : 1, 0 : 1 |
| 14 | AS Roma (8) | Bye | |
| 15 | Lille (18) | Crvena zvezda (15) | 2 : 0, 0 : 1 |
| 16 | Aston Villa (2) | Bye |
1/8-finals
| 1 | Ferencvaros (12) | Braga (6) | 0 : 4, 2 : 0 |
| 2 | Panathinaikos (20) | Betis (4) | 0 : 4, 1 : 0 |
| 3 | Genk (9) | Freiburg (7) | 1 : 5, 1 : 0 |
| 4 | Celta Vigo (16) | Lyon (1) | 2 : 0, 1 : 1 |
| 5 | Stuttgart (11) | FC Porto (5) | 0 : 2, 1 : 2 |
| 6 | Nottingham (13) | Midtjylland (3) | 3 : 1, 0 : 1 |
| 7 | Bologna (10) | AS Roma (8) | 4 : 3, 1 : 1 |
| 8 | Lille (18) | Aston Villa (2) | 0 : 2, 0 : 1 |
Quarter-finals
| 1 | Braga (6) | Betis (4) | 4 : 2, 1 : 1 |
| 2 | Freiburg (7) | Celta Vigo (16) | 3 : 1, 3 : 0 |
| 3 | FC Porto (5) | Nottingham (13) | 0 : 1, 1 : 1 |
| 4 | Bologna (10) | Aston Villa (2) | 0 : 4, 1 : 3 |
Semi-finals
| 1 | Braga (6) | Freiburg (7) | 1 : 3, 2 : 1 |
| 2 | Nottingham (13) | Aston Villa (2) | 0 : 4, 1 : 0 |
Final
| 1 | Freiburg (7) | Aston Villa (2) | 0 : 3 |
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