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1/8-finals
Quarter-finals
Draw
2025/261/8-finals
| 1 | Lugano | Bye | |
| 2 | Paks | CFR Cluj | |
| 3 | Sabah Baku | Celje | |
| 4 | AEK Larnaca | Partizan | |
| 5 | Levski Sofia | H. Beer Sheva | |
| 6 | Bye | Braga | |
| 7 | Ostrava | Bye | |
| 8 | Legia | Aktobe | |
| 9 | Anderlecht | Bye | |
| 10 | Trnava | Hacken | |
| 11 | Sheriff Tiraspol | Prishtina | |
| 12 | Bye | Utrecht | |
| 13 | Midtjylland | Bye | |
| 14 | Bye | Hibernian | |
| 15 | Besiktas | Bye | |
| 16 | Shakhtar Donetsk | Ilves |
Quarter-finals
| 1 | Lugano | TBD #2 | |
| 2 | TBD #3 | TBD #4 | |
| 3 | TBD #5 | Braga | |
| 4 | Ostrava | TBD #8 | |
| 5 | Anderlecht | TBD #10 | |
| 6 | TBD #11 | Utrecht | |
| 7 | Midtjylland | Hibernian | |
| 8 | Besiktas | TBD #16 |
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